Publications |

Identification of structural and regulatory cell-shape determinants in Haloferax volcanii

Heather Schiller, Yirui Hong, Joshua Kouassi, Theopi Rados, Jasmin Kwak, Anthony DiLucido, Daniel Safer, Anita Marchfelder, Friedhelm Pfeiffer, Alexandre Bisson, Stefan Schulze, Mechthild Pohlschroder

Nature Communications · 15 Feb 2024

PeptideForest: Semisupervised machine learning integrating multiple search engines for peptide identification

T. Ranff, M. Dennison, J. Bédorf, S. Schulze, N Zinn, M. Bantscheff, J.J.R.M. van Heugten, C. Fufezan

bioRxiv · 22 Dec 2022

A Twist to the Kirby-Bauer Disk Diffusion Susceptibility Test: an Accessible Laboratory Experiment Comparing Haloferax volcanii and Escherichia coli Antibiotic Susceptibility to Highlight the Unique Cell Biology of Archaea

Heather Schiller, Criston Young, Stefan Schulze, Manuela Tripepi, Mechthild Pohlschroder

Journal of Microbiology & Biology Education · 29 Apr 2022

Advanced Understanding of Prokaryotic Biofilm Formation through Use of a Cost-Effective and Versatile Multipanel Adhesion (mPAD) Mount

Stefan Schulze, Heather Schiller, Jordan Solomonic, Orkan Telhan, Kyle Costa, Mechthild Pohlschroder

Applied and Environmental Microbiology · 22 Feb 2022

A proteomics sample metadata representation for multiomics integration and big data analysis

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, Björn Grüning, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W. Deutsch, Juan Antonio Vizcaíno, Mingze Bai, Timo Sachsenberg, Lev I. Levitsky, Yasset Perez-Riverol

Nature Communications · 06 Oct 2021

Comprehensive glycoproteomics shines new light on the complexity and extent of glycosylation in archaea

Stefan Schulze, Friedhelm Pfeiffer, Benjamin A. Garcia, Mechthild Pohlschroder

PLOS Biology · 17 Jun 2021

Enhancing Open Modification Searches via a Combined Approach Facilitated by Ursgal

Stefan Schulze, Aime Bienfait Igiraneza, Manuel Kösters, Johannes Leufken, Sebastian A. Leidel, Benjamin A. Garcia, Christian Fufezan, Mechthild Pohlschroder

Journal of Proteome Research · 29 Jan 2021

Haloferax volcanii Immersed Liquid Biofilms Develop Independently of Known Biofilm Machineries and Exhibit Rapid Honeycomb Pattern Formation

Heather Schiller, Stefan Schulze, Zuha Mutan, Charlotte de Vaulx, Catalina Runcie, Jessica Schwartz, Theopi Rados, Alexandre W. Bisson Filho, Mechthild Pohlschroder

mSphere · 23 Dec 2020

SugarPy facilitates the universal, discovery-driven analysis of intact glycopeptides

Stefan Schulze, Anne Oltmanns, Christian Fufezan, Julia Krägenbring, Michael Mormann, Mechthild Pohlschröder, Michael Hippler

Bioinformatics · 01 Dec 2020

The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics

Stefan Schulze, Zachary Adams, Micaela Cerletti, Rosana De Castro, Sébastien Ferreira-Cerca, Christian Fufezan, María Inés Giménez, Michael Hippler, Zivojin Jevtic, Robert Knüppel, Georgio Legerme, Christof Lenz, Anita Marchfelder, Julie Maupin-Furlow, Roberto A. Paggi, Friedhelm Pfeiffer, Ansgar Poetsch, Henning Urlaub, Mechthild Pohlschroder

Nature Communications · 19 Jun 2020

Lipid Anchoring of Archaeosortase Substrates and Midcell Growth in Haloarchaea

Mohd Farid Abdul-Halim, Stefan Schulze, Anthony DiLucido, Friedhelm Pfeiffer, Alexandre Wilson Bisson Filho, Mechthild Pohlschroder

mBio · 28 Apr 2020

Novel Insights Into N-Glycan Fucosylation and Core Xylosylation in C. reinhardtii

Anne Oltmanns, Lara Hoepfner, Martin Scholz, Karen Zinzius, Stefan Schulze, Michael Hippler

Frontiers in Plant Science · 15 Jan 2020

Haloferax volcanii

Mechthild Pohlschroder, Stefan Schulze

Trends in Microbiology · 01 Jan 2019

Structure of a PSI–LHCI–cyt b ₆ f supercomplex in Chlamydomonas reinhardtii promoting cyclic electron flow under anaerobic conditions

Janina Steinbeck, Ian L. Ross, Rosalba Rothnagel, Philipp Gäbelein, Stefan Schulze, Nichole Giles, Rubbiya Ali, Rohan Drysdale, Emma Sierecki, Yann Gambin, Henning Stahlberg, Yuichiro Takahashi, Michael Hippler, Ben Hankamer

Proceedings of the National Academy of Sciences · 25 Sep 2018

Archaeal cell surface biogenesis

Mechthild Pohlschroder, Friedhelm Pfeiffer, Stefan Schulze, Mohd Farid Abdul Halim

FEMS Microbiology Reviews · 15 Jun 2018

pymzML v2.0: introducing a highly compressed and seekable gzip format

M Kösters, J Leufken, S Schulze, K Sugimoto, J Klein, R P Zahedi, M Hippler, S A Leidel, C Fufezan

Bioinformatics · 31 Jan 2018

N-Glycoproteomic Characterization of Mannosidase and Xylosyltransferase Mutant Strains of Chlamydomonasreinhardtii

Stefan Schulze, Anne Oltmanns, Nick Machnik, Gai Liu, Nannan Xu, Niklas Jarmatz, Martin Scholz, Kazuhiko Sugimoto, Christian Fufezan, Kaiyao Huang, Michael Hippler

Plant Physiology · 29 Dec 2017

Identification of methylated GnTI‐dependent N ‐glycans in Botryococcus brauni

Stefan Schulze, Eugen Urzica, Maarten J. M. F. Reijnders, Henri Geest, Sven Warris, Linda V. Bakker, Christian Fufezan, Vitor A. P. Martins dos Santos, Peter J. Schaap, Sander A. Peters, Michael Hippler

New Phytologist · 24 Jul 2017

ArtA-Dependent Processing of a Tat Substrate Containing a Conserved Tripartite Structure That Is Not Localized at the C Terminus

Mohd Farid Abdul Halim, Jonathan D. Stoltzfus, Stefan Schulze, Micheal Hippler, Mechthild Pohlschroder

Journal of Bacteriology · 01 Apr 2017

Calredoxin represents a novel type of calcium-dependent sensor-responder connected to redox regulation in the chloroplast

Ana Karina Hochmal, Karen Zinzius, Ratana Charoenwattanasatien, Philipp Gäbelein, Risa Mutoh, Hideaki Tanaka, Stefan Schulze, Gai Liu, Martin Scholz, André Nordhues, Jan Niklas Offenborn, Dimitris Petroutsos, Giovanni Finazzi, Christian Fufezan, Kaiyao Huang, Genji Kurisu, Michael Hippler

Nature Communications · 14 Jun 2016

Identification of Haloferax volcanii Pilin N-Glycans with Diverse Roles in Pilus Biosynthesis, Adhesion, and Microcolony Formation

Rianne N. Esquivel, Stefan Schulze, Rachel Xu, Michael Hippler, Mechthild Pohlschroder

Journal of Biological Chemistry · 01 May 2016

Ursgal, Universal Python Module Combining Common Bottom-Up Proteomics Tools for Large-Scale Analysis

Lukas P. M. Kremer, Johannes Leufken, Purevdulam Oyunchimeg, Stefan Schulze, Christian Fufezan

Journal of Proteome Research · 13 Jan 2016

Calcium-dependent regulation of photosynthesis

Ana Karina Hochmal, Stefan Schulze, Kerstin Trompelt, Michael Hippler

Biochimica et Biophysica Acta (BBA) - Bioenergetics · 01 Sep 2015

The Interplay of Light and Oxygen in the Reactive Oxygen Stress Response of Chlamydomonas reinhardtii Dissected by Quantitative Mass Spectrometry

Johannes Barth, Sonja Verena Bergner, Daniel Jaeger, Anna Niehues, Stefan Schulze, Martin Scholz, Christian Fufezan

Molecular & Cellular Proteomics · 01 Apr 2014

Exploring the N-glycosylation Pathway in Chlamydomonas reinhardtii Unravels Novel Complex Structures

Elodie Mathieu-Rivet, Martin Scholz, Carolina Arias, Flavien Dardelle, Stefan Schulze, François Le Mauff, Gavin Teo, Ana Karina Hochmal, Amaya Blanco-Rivero, Corinne Loutelier-Bourhis, Marie-Christine Kiefer-Meyer, Christian Fufezan, Carole Burel, Patrice Lerouge, Flor Martinez, Muriel Bardor, Michael Hippler

Molecular & Cellular Proteomics · 01 Nov 2013

An essential serotype recognition pocket on phage P22 tailspike protein forces Salmonella enterica serovar Paratyphi A O-antigen fragments to bind as nonsolution conformers

Dorothee Andres, Ulrich Gohlke, Nina K Broeker, Stefan Schulze, Wolfgang Rabsch, Udo Heinemann, Stefanie Barbirz, Robert Seckler

Glycobiology · 03 Jan 2013